Last updated: 2022-01-24

Checks: 2 0

Knit directory: genes-to-foodweb-stability/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 18d1722. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/.Rhistory
    Ignored:    output/.Rapp.history

Untracked files:
    Untracked:  output/all.mar1.brm.adj.rds
    Untracked:  output/all.mar1.brm.unadj.ar2.lag.rds
    Untracked:  output/all.mar1.brm.unadj.noBRBRonLYER.rds
    Untracked:  output/all.mar1.brm.unadj.rds
    Untracked:  output/all.mar1.brm.unadj.xAOP2.rds
    Untracked:  output/initial.mar1.brm.adj.rds
    Untracked:  output/initial.mar1.brm.unadj.rds

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 1955523 mabarbour 2020-10-11 Build site.
html 51fc18b mabarbour 2020-06-23 Build site.
Rmd 86116c8 mabarbour 2020-06-23 bioRxiv version of code and data.
html 86116c8 mabarbour 2020-06-23 bioRxiv version of code and data.
html 28c2a9f mabarbour 2020-02-05 Build site.
Rmd 27ad8e2 mabarbour 2020-02-05 Start workflowr project.

All data within this repository is under a CC0 License, everything else is under a MIT License.

CC0
To the extent possible under law, Matthew A. Barbour has waived all copyright and related or neighboring rights to this work. This work is published from: Switzerland.

The MIT License (MIT) Copyright (c) 2020 Matthew A. Barbour

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.